PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.3G071500.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family Trihelix
Protein Properties Length: 399aa    MW: 45720.9 Da    PI: 4.3409
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.3G071500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix46.87.5e-15164248286
            trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmre.rgferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         Wt++e+ +L++a  ++  + ++++l+   W+ev++k++e  ++er+ +qC+++++ l+k+ykk++    + t +++s+++yf++++
  Prupe.3G071500.1.p 164 WTEHETFVLLDAWGDRFLQRGKKSLRSEEWQEVAEKVSEvSKIERTDTQCRNRLDTLKKKYKKERLKFAE-TGGATSKWVYFKKMD 248
                         *************************************762678**********************99998.688999********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.7E-21163250No hitNo description
PROSITE profilePS500906.319164221IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.1E-4179229IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MDDTEDDAKV SSKPIWCESP AGLWFFSKGR NLPVRSGPYS RPVGSHYVDD EEDDEDEEDE  60
ELGEEEEDNN GQNGYPSVHK DVDDDDDDED DGDDEEDEED EDDNKSKVYN RMIDDADLKK  120
HPKKRKLKNL ISSYEFAPRL PAPPAAAPSA PRQSIGGRNS LTDWTEHETF VLLDAWGDRF  180
LQRGKKSLRS EEWQEVAEKV SEVSKIERTD TQCRNRLDTL KKKYKKERLK FAETGGATSK  240
WVYFKKMDML MSSPQQQSGL SCGLDSGEYV FMNPRVYLNR ANGLDEMRDS PGNSESAEGV  300
DDDSDGLPPK KRRYGRDNDD RCSFRLLADS IQKFSDIYEK IETSKRQQMV ELEKMRMDFH  360
RDLEMQKRQI MERAQAEIAK IQQGDDEEND ISAENASG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117125LKKHPKKRK
2119125KHPKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007217259.10.0hypothetical protein PRUPE_ppa009556mg
RefseqXP_008228507.10.0PREDICTED: rRNA biogenesis protein RRP36-like
TrEMBLM5XAB80.0M5XAB8_PRUPE; Uncharacterized protein
STRINGVIT_09s0002g04700.t011e-150(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24413480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.16e-75Trihelix family protein